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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015805749.1_cds_XP_016494059.1_8505
CDS Infomation

[gene=LOC107813321] [db_xref=GeneID:107813321] [protein=ion channel DMI1-like isoform X3] [protein_id=XP_016494059.1] [location=join(675..1277,2052..2120,2370..2990,3974..4156,4374..4433,4512..4715,5811..6059,14258..14356,16295..16489,16940..17016,17316..17424)] [gbkey=CDS]
Sequence

ATGCCCGACAGAGATGGAGCTCCAAATCCGAATCCGAGTCCAAATCCTAACAAGCCGGAG
AGACCTCCGTTGCTCAAGAAATCCAAAACCATCGCCGCCCACTTCTCGGGCCCACTTTTC
CCCGCCGTTCGTCGTGTCTCTTCTACTTCACCGTCCTCCCCCCGCTTCTCCTCTGAATCT
AATACCTATTCCGCCTCTTCTACCTCCACATCAACTTCAGCATCTACGACTCATGATGCA
AACTTCGGATTTGGTGATCGTGACTACGTTTATCCTTCTTTTTTGGGACCTCATACTGCT
AGGAGTAGAGTCAACTTCAAGTCAACTTCCAAATCACAGAGGAATCAGCTGGAATTGTCG
AAATTACCCGCTCGTAGCGAGTCTATGCCGTCGAATTTGACTAGTGAAGGGGGTGGAGCT
AAGGCTGAGCCGAAGATGAAGCCGAAGCCGAAACTGAAAGCTGAGAAAGATTTGCATGCT
TTGTCAATTCAAGTCTCGAATCCAGCTTCTTCTTCAGCTTTGTCATCAGAGTCTTCTACT
TCAGTTAACTCCTCTAATGCTCGAAGAGCTTCTGGTCATAGCAATTCCTGGATTCTTTTT
TTGCTTAAGTTTGTTTGTACAATATCAGTATCTCACACATTATATTTGCGGAATGAAGTC
TCTAAGCTTCAGGAGGAGAATGTTAGTCTTCGCAGAGTTTGTAGCCATGTTGATCTTGCC
AGTGCTGGTATCACGGAGCTAAAAGAAGTTAATTCACTAGTGTATTTTGGGAATGCTGAC
AGTAGAATAGTTTCTCTGTACATGGTGATTTTCATCCTCGTTACTCCTTTTGTATTGTAC
AAATATCTTGACTCTCTTCCGAGAATAATTGATCTCTTAAAGAGGAAAACTACCAAAAAG
GAGGAGGTTCCATTGAAGAAAAAGATTGCTTACATGGTGGATGTGTGTTTCTCAGTTTAC
CCTTATGCAAAGCTGCTTGCACTTCTCTTTGCCACTCTCTTTCTAATTGGTTATGGAGGA
TTGGCACTTTATGCCGTTGGTGATGGCAGCTTTACTGAAGCTCTTTGGCTTTCTTGGAGC
TTCGTAGCAGACTCTGGAAGCCATGCTGATATGGCTGGTGCAGGGCCAAGGATAGTTTCA
GTTCTGATAACCTCAGGAGGCATGCTCATATTTGCTATGATGCTGGGGCTTGTTTCAGAT
GCTATTTCAGAAAAAGTGGATTCCTTACGGAAAGGAAAGAGTGAGGTGATTGAAAGTAAT
CACATTCTTATTCTTGGGTGGAGTGATAAATTGGGGTCACTTTTGAAGCAGCTAGCAATA
GCAAACAAGAGCATTGGTGGTGGTGTTGTCGTTGTGCTCGCGGAAAGAGACAAAGAGGAG
ATGGAGATGGACATAGCAAAGTTAGAATTTGACTTCATGGGAACTTCAGTTATCTGCAGA
AGTGGCAGTCCTTTAATACTTGCTGACTTGAAAAAGGTCTCAGTCTCGAAAGCACGTGGA
ATCATTGTCTTAGCATCTGATGAGAATGCTGATCAGAGTGATGCACGTGCTTTAAGGGTT
GTACTTAGCCTAACTGGAGTAAGAGAAGGGTTGAGAGGTCATGTTGTTGTGGAGATGAGT
GATCTCGACAACGAACCGTTAGTGAAGCTTGTTGGTGGGGAACTTATTGAAACAGTTGTT
GCTCATGATGTGATTGGGAGGTTGATGATACAGTGCGCTTTGCAGCCTGGCCTTGCTCAG
ATTTGGGAAGACATTTTGGGCTTTGAAAATGCAGAATTTTACATTAAACGGTGGCCTCAA
TTGGATGGTGTACCCTTTGAAGATGTACTGGTATCATTTCCAGATGCAATTCCTTGTGGA
GTTAAGGTTGCTGCTGATGGGGGGAAGATTATCATAAATCCTGATGATAGATATGTTCTA
AAAGAAGGTGATGAAGTCCTTGTCATAGCTGAAGATGATGATACCTATGCACCAGGTCCC
TTGCCAGAGGTAAATAAAGGCCTATTCCCTAGGATTGCTGATCCTCCAAAATATCCAGAA
AGAATCTTATTCTGTGGTTGGAGACGTGATATTGACGATATGATTATGGTGCTAGAGGCA
TTATTGGCTCCAGGGTCTGAATTATGGATGCTTAATGAGGTTGCCGAGAAAGATAGAGAA
AGGAAGTTGACTGATGGGGGCCTTGATATCTCAGGACTGGAGAACATAAAACTTGTCCAT
CATGTGGGAAATGCAGTGATTAGACGTCATTTGGAGGGTCTTCCTTTGGAGACATTTGAT
TCGATGAATCTGTTGAAGACTCCATTGTTCACTCTGATTCACGGTCTCTTGCTACCCTCC
TCCTCATCCGAGATATCCAGTCGAAGCGTCTTCCTAATAAAGATTCTAGGTCGATTCCTC
TACGGCATTCTGTGTTTTCTCAGAGCTCCTGGATTCGTGAAATGCAGCAGGCGTCAGACA
GATCAATAA

Peptide Sequence

PEP ID

XP_016494059.1
PEP Infomation

PREDICTED: ion channel DMI1-like isoform X3 [Nicotiana tabacum]
Sequence

MPDRDGAPNPNPSPNPNKPERPPLLKKSKTIAAHFSGPLFPAVRRVSSTSPSSPRFSSES
NTYSASSTSTSTSASTTHDANFGFGDRDYVYPSFLGPHTARSRVNFKSTSKSQRNQLELS
KLPARSESMPSNLTSEGGGAKAEPKMKPKPKLKAEKDLHALSIQVSNPASSSALSSESST
SVNSSNARRASGHSNSWILFLLKFVCTISVSHTLYLRNEVSKLQEENVSLRRVCSHVDLA
SAGITELKEVNSLVYFGNADSRIVSLYMVIFILVTPFVLYKYLDSLPRIIDLLKRKTTKK
EEVPLKKKIAYMVDVCFSVYPYAKLLALLFATLFLIGYGGLALYAVGDGSFTEALWLSWS
FVADSGSHADMAGAGPRIVSVLITSGGMLIFAMMLGLVSDAISEKVDSLRKGKSEVIESN
HILILGWSDKLGSLLKQLAIANKSIGGGVVVVLAERDKEEMEMDIAKLEFDFMGTSVICR
SGSPLILADLKKVSVSKARGIIVLASDENADQSDARALRVVLSLTGVREGLRGHVVVEMS
DLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPGLAQIWEDILGFENAEFYIKRWPQ
LDGVPFEDVLVSFPDAIPCGVKVAADGGKIIINPDDRYVLKEGDEVLVIAEDDDTYAPGP
LPEVNKGLFPRIADPPKYPERILFCGWRRDIDDMIMVLEALLAPGSELWMLNEVAEKDRE
RKLTDGGLDISGLENIKLVHHVGNAVIRRHLEGLPLETFDSMNLLKTPLFTLIHGLLLPS
SSSEISSRSVFLIKILGRFLYGILCFLRAPGFVKCSRRQTDQ

Transcript Sequence

Gene sequence data has not been registered.